Rolf Kümmerli

ZORA Publication List

Publications

• Swayambhu, Meghna; Gysi, Mario; Haas, Cordula; Schuh, Larissa; Walser, Larissa; Javanmard, Fardin; Flury, Tamara; Ahannach, Sarah; Lebeer, Sarah; Hanssen, Eirik; Snipen, Lars; Bokulich, Nicholas A; Kümmerli, Rolf; Arora, Natasha (2025). Standardizing a microbiome pipeline for body fluid identification from complex crime scene stains. Applied and Environmental Microbiology, 91(5):Epub ahead of print.
• Gourgoulianni, Natalia; Kümmerli, Rolf; Blanckenhorn, Wolf U (2025). Nutritional effects on growth and development of sepsid flies. Entomologia Experimentalis et Applicata, 173(2):105-117.
• Vollenweider, Vera; Rehm, Karoline; Chepkirui, Clara; Pérez-Berlanga, Manuela; Polymenidou, Magdalini; Piel, Jörn; Bigler, Laurent; Kümmerli, Rolf (2024). Antimicrobial activity of iron-depriving pyoverdines against human opportunistic pathogens. eLife, 13:RP92493.
• Vollenweider, Vera; Roncoroni, Flavie; Kümmerli, Rolf (2024). Pyoverdine–antibiotic combination treatment: its efficacy and effects on resistance evolution in $Escherichia$ $coli$. microLife, 5:uqae021.
• Laffont, Clémentine; Wechsler, Tobias; Kümmerli, Rolf (2024). Interactions between $Pseudomonas$ $aeruginosa$ and six opportunistic pathogens cover a broad spectrum from mutualism to antagonism. Environmental Microbiology Reports, 16(5):e70015.
• Gu, Shaohua; Shao, Yuanzhe; Rehm, Karoline; Bigler, Laurent; Zhang, Di; He, Ruolin; Xu, Ruichen; Shao, Jiqi; Jousset, Alexandre; Friman, Ville-Petri; Bian, Xiaoying; Wei, Zhong; Kümmerli, Rolf; Li, Zhiyuan (2024). Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways. eLife, 13:RP96719.
• Leinweber, Anne; Laffont, Clémentine; Lardi, Martina; Eberl, Leo; Pessi, Gabriella; Kümmerli, Rolf (2024). RNA-Seq reveals that Pseudomonas aeruginosa mounts growth medium-dependent competitive responses when sensing diffusible cues from Burkholderia cenocepacia. Communications Biology, 7(1):995.
• Schmitz, Désirée A; Wechsler, Tobias; Li, Hongwei Bran; Menze, Bjoern H; Kümmerli, Rolf (2024). A new protocol for multispecies bacterial infections in zebrafish and their monitoring through automated image analysis. PLoS ONE, 19(8):e0304827.
• Gu, Shaohua; Shao, Yuanzhe; Rehm, Karoline; Bigler, Laurent; Zhang, Di; He, Ruolin; Xu, Ruichen; Shao, Jiqi; Jousset, Alexandre; Friman, Ville-Petri; Bian, Xiaoying; Wei, Zhong; Kümmerli, Rolf; Li, Zhiyuan (2024). From sequence to molecules: Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways. eLife, 13:RP96719.
• Mridha, Subham; Wechsler, Tobias; Kümmerli, Rolf (2024). Space and genealogy determine inter-individual differences in siderophore gene expression in bacterial colonies. Cell Reports, 43(4):114106.
• Wang, Nanqi; Wang, Tianqi; Chen, Yu; Wang, Ming; Lu, Qiaofang; Wang, Kunguang; Dou, Zhechao; Chi, Zhiguang; Qiu, Wei; Dai, Jing; Niu, Lei; Cui, Jianyu; Wei, Zhong; Zhang, Fusuo; Kümmerli, Rolf; Zuo, Yuanmei (2024). Microbiome convergence enables siderophore-secreting-rhizobacteria to improve iron nutrition and yield of peanut intercropped with maize. Nature Communications, 15(1):839.
• Schmitz, Désirée A; Wechsler, Tobias; Mignot, Ingrid; Kümmerli, Rolf (2024). Predicting bacterial interaction outcomes from monoculture growth and supernatant assays. ISME Communications, 4(1):ycae045.
• Kümmerli, Rolf (2023). Iron acquisition strategies in pseudomonads: mechanisms, ecology, and evolution. Biometals, 36(4):777-797.
• Schmitz, Désirée A; Allen, Richard C; Kümmerli, Rolf (2023). Negative interactions and virulence differences drive the dynamics in multispecies bacterial infections. Proceedings of the Royal Society of London, Series B: Biological Sciences, 290(2003):20231119.
• Kümmerli, Rolf; Frank, Steven A (2023). Evolutionary explanations for heterogeneous behavior in clonal bacterial populations. Trends in Microbiology, 31(7):665-667.
• Niggli, Selina; Schwyter, Lukas; Poveda, Lucy; Grossmann, Jonas; Kümmerli, Rolf (2023). Rapid and strain-specific resistance evolution of $Staphylococcus aureu$s against inhibitory molecules secreted by $Pseudomonas aeruginosa$. mBio, 14(5):e0315322.
• Rehm, Karoline; Vollenweider, Vera; Kümmerli, Rolf; Bigler, Laurent (2023). Pyoverdine Analysis – From High-resolution MS/MS Fragmentation to Ion Mobility Measurements. Chimia, 77(4):250.
• Rehm, Karoline; Vollenweider, Vera; Gu, Shaohua; Friman, Ville-Petri; Kümmerli, Rolf; Wei, Zhong; Bigler, Laurent (2023). Chryseochelins—structural characterization of novel citrate-based siderophores produced by plant protecting Chryseobacterium spp. Metallomics, 15(3):mfad008.
• Rehm, Karoline; Vollenweider, Vera; Kümmerli, Rolf; Bigler, Laurent (2023). Rapid identification of pyoverdines of fluorescent Pseudomonas spp. by UHPLC-IM-MS. Biometals, 36(1):19-34.
• Swayambhu, Meghna; Kümmerli, Rolf; Arora, Natasha (2023). Microbiome-Based Stain Analyses in Crime Scenes. Applied and Environmental Microbiology, 89(1):e0132522.

Pagination