Cytomapper: an R/bioconductor package for visualisation of highly multiplexed imaging data
In this work, the Bodenmiller group describes the R package "cytomapper", which enables visualisation of pixel- and cell-level information obtained by multiplexed imaging.
See Eling et al., Bioinformatics.
The cytomapper package can be downloaded here.
Code for analysis and further instructions can be found at GitHub