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Department of Quantitative Biomedicine

The Bodenmiller group publishes the cytomapper package, a tool to visualise highly multiplexed imaging data in R

Cytomapper: an R/bioconductor package for visualisation of highly multiplexed imaging data​​​​​​​

Fig.1 Cytomapper functionality © The Authors

In this work, the Bodenmiller group describes the R package "cytomapper", which enables visualisation of pixel- and cell-level information obtained by multiplexed imaging.

See Eling et al., Bioinformatics.

The cytomapper package can be downloaded here.

Code for analysis and further instructions can be found at GitHub